Ligand Separation using PyMOL | PyMOL Commands | PyMol Series | Part-3 | Basic Science Series

Learn how to use PyMOL. In this video, I will show you how to download the protein structure directly to PyMOL software. IN this video we will separate ligand from its protein structure. We will delete the protein receptor molecules and we will save the ligand as a separate PDB file. This is very useful if you want to perform docking and you are not able to find the PDB file of your molecule.

PyMOL is an open-source molecular visualization system created by Warren Lyford DeLano. It was commercialized initially by DeLano Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities. It is currently commercialized by Schrödinger, Inc. PyMOL can produce high-quality 3D images of small molecules and biological macromolecules, such as proteins. According to the original author, by 2009, almost a quarter of all published images of 3D protein structures in the scientific literature were made using PyMOL.

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Disclaimer: The information provided is for educational purposes only. The original source of the information: https://en.wikipedia.org/wiki/PyMOL This content is available under a creative commons license: CC-BY-SA ... https://www.youtube.com/watch?v=GMz8RgKtKHI